A library of N-glycan standards enables targeted glycomics

Author(s)

C. Ashwood and R.D Cummings

Sources

doi: https://doi.org/10.1101/2025.06.09.658590

Studies on glycans of glycoproteins are hampered by the lack of standards that reflect the wide diversity in structure typically observed. To this end the authors have exploited a large library of N-glycan standards comprised of a unique collection of 226 N-glycans including oligomannose, hybrid, and complex-type. Theygenerated a method employing porous graphitized carbon (PGC) and liquid chromatography mass spectrometry (PGC-LC-MS), which can provide a high degree of resolution of underivatized N-glycan structures. Chromatogram libraries arising from these studies include retention time data, diagnostic fragments, and validated structural assignments, providing a robust platform for both targeted and discovery-based glycomics. THe authors refer to this as an N-glycopedia, the first type of resource in which researchers can compare this collective data to N-glycans under study and overcome the limitations of only having compositional data and predicted structures. The technology is easily expandable to include additional N-glycans as new standards become available.

Figure. Advancements in non-reduced glycan analysis enable the development of a targeted N-glycan assay. (A) Data acquisition workflow for constructing an N-glycopedia of pure N-glycan structures. (B) Comparison of reduced and non-reduced glycans demonstrating equivalent performance by native PGC-LC-MS. (C) Reduced and non-reduced dextran ladder subunits produce equivalent chromatograms (* indicates isotopic interference from non-reduced dextran ladder). (D) Peak widths are consistent across dextran ladder formats, except for GU7. (E) RTs are consistent and equivalent between dextran ladder formats.

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