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Symbolic Representation of Monosaccharides in the Age of Glycobiology

Serge Perez

References

Berger, O., McBride, R., Razi, N. & Paulson, J. (2008) “Symbol Notation Extension for Pathogen Polysaccharides”, The Scripps Research Institute, Consortium for Functional Glycomics.

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Consortium for Functional Glycomics : http://www.functionalglycomics.org

Engelsen, S.B., Hansen, P.I., Perez, S. (2013) POLYS 2.0 : An open source software package for building three-dimensional structures of polysaccharides, Biopolymers.

Fischer, E., (1890) Synthesen in der Zuckergruppe, Ber. Dtsch. Chem. Ges, 23, 2114-2141

Glyco3D, A Site for Glycosciences : http://www.glyco3d.cermav.cnrs.fr

International Union of Pure and Applied Chemistry (IUPAC) Nomenclature Home Page ; http://www.chem.qmw.ac.uk/iupac

International Union of Biochemistry and Molecular Biology (IUBMB) Nomenclature Home Page ; http://www.chem.qmw.ac.uk/iubmb

Kamerling, J.P. (2007) Basic Concepts and Nomenclature Recommendations in Carbohydrate Chemistry, in Comprehensive Glycosciences, From Chemistry to System Biology, Vol. 1, pp. 1-37, Kamerling, J.P., Ed., Elsevier.

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Michell, E.P., Sabin, C., Snajdrova, L., Budova, M., Perret, S., Gautier, C., Hofr, C., Gilboa-Garber, N., Koca, J., Wimmerova, M., Imberty, A. (2005) High-Affinity Fucose Binding of PA-IIL 1.0 Ang. Resolution Crystal Structure of the Complex Combined with Thermodynamics and Computational Chemistry Approaches, Proteins. Struct. Funct. Bio info, 58, 735-746.

S. Perez & K.F. Aoki-Kinoshita (2017) Development of Carbohydrate Nomenclature and Representation, in A Practical Guide to Using Glycomics Databases, 7-25,

Varki, A. (2008) Historical Background, and Overview, in Essentials of Glycobiology,(2nd edition, pp. 784. Varki, A., Cummings, R.D., Esko, J.D., Freeze, H.H., Hart, G.W., Etzler, M.E., eds., Cold Spring Harbor Laboratory Press.

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K.F. Aoki-Kinoshita, A. Dell, H. Narimatsu, W. Yor, N. Tanigichi & S. Korfeld (2016) Symbol Nomenclature for Graphical Representation of Glycans, Glycobiology, 25, 1323-1234,

Werz, D.B., Ranzinger, R., Herget, S., Adibekian, A., von der Lieth, C.-W., Seeberger, P.H. (2007) Exploring the Structural Diversity of Mammalian Carbohydrates (“’Glycospace”) by Statistical DataBank Analysis, ACS Chemical Biology, 2, 685-691.