Search
Close this search box.

LectomeXplore and a new lectin classificatin

Author(s)

F. Bonnardel, J. Mariethoz, S. Perez, A. Imberty & F Lisacek

Sources

Nucleic Acids Research, gkaa1019, https://doi.org/10.1093/nar/gkaa1019

Lectins are non-covalent glycan-binding proteins mediating cellular interactions but their annotation in newly sequenced organisms is lacking. The limited size of functional domains and the low level of sequence similarity challenge usual bioinformatics tools. The identification of lectin domains in proteomes requires the manual curation of sequence alignments based on structural folds.
lectome.png
A new lectin classification is proposed. It is built on three levels: 1) 35 lectin domain folds, 2) 109 classes of lectins sharing at least 20% sequence similarity and 3) 350 families of lectins sharing at least 70% sequence similarity. This information is compiled in the UniLectin platform that includes the previously described UniLectin3D database of curated lectin 3D structures. Since its first release, UniLectin3D has been updated with 485 additional 3D structures. The database is now complemented by two additional modules: PropLec containing predicted β-propeller lectins and LectomeXplore including predicted lectins for every curated lectin class. UniLectin is accessible at https://www.unilectin.eu/

Latest news

The complexity of plant cell walls at different hierarchical levels still hinders the detailed understanding...

Plastic production reached 400 million tons in 2022, with packaging and single-use plastics accounting for...

Glycans constitute the most complicated post-translational modification, modulating protein activity in health and disease. However,...

The introduction of AlphaFold 2 has sparked a revolution in the modelling of protein structure...